YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70995376, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPPVPSRAF FREVSTKHGP YIVSCLPTKS QRLPKIPNRT LPPSSTCSRV LGPRLHRQYT  60
   61 TASAQSQTAK PYQLLRRIVG FTAIAIVAFS TGLAYQTQKT VSRMMAASMP TDEETLTAFV 120
  121 PSDELSKEVE EYIRNHPVTL ALRQNPAYTE SRPHMKIPQE LRARHLTAGI LATPGGIVVP 180
  181 PYVFCEEGGK SLTAIFYLGS DVSGHPGIVH GGLLATLLDE SMARCCFPAL PNKVGVTANL 240
  241 NIDYRRPAMA NNYAVLKAKT VKVEGRKAWV EAHIETLPED GKEPVILVEA KALFVEPKQA 300
  301 AVSPFPGAVG IRNNVLTMIS GHGDMFRNKR LEICRGPVSG GIETCLFWAY RWDHVRNITV 360
  361 VTPKHGPPPP LMDLPMTASS KLHTTRLPTS AELLSDYLTP FAWV

Type	Start	End	Confidence
Cytoplasmic	1	73	0.81
Transmembrane Helix	74	95	0.77
Non-Cytoplasmic	96	404	0.92