YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|159131020
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	5	0.83
Transmembrane Helix	6	24	0.86
Non-Cytoplasmic	25	31	0.75
Transmembrane Helix	32	52	0.92
Cytoplasmic	53	63	0.83
Transmembrane Helix	64	83	0.90
Non-Cytoplasmic	84	137	0.93
Transmembrane Helix	138	160	0.82
Cytoplasmic	161	172	0.83
Transmembrane Helix	173	193	0.95
Non-Cytoplasmic	194	205	0.77
Transmembrane Helix	206	225	0.96
Cytoplasmic	226	233	0.81
Transmembrane Helix	234	250	0.89
Non-Cytoplasmic	251	270	0.83
Transmembrane Helix	271	290	0.68
Cytoplasmic	291	297	0.52
Transmembrane Helix	298	322	0.83
Non-Cytoplasmic	323	359	0.73
Transmembrane Helix	360	383	0.79
Cytoplasmic	384	403	0.72
Transmembrane Helix	404	425	0.67
Non-Cytoplasmic	426	441	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWLFRILSSA LFLTVTVSSI PLAFDVGGKT CGLAFSLSLA TFYFIFSLLR LTTPERSWFR  60
   61 SSVIVLIRST QWIIIPILLI WSLNRFSIDS DNTSSWVERT FSGKRAQDSS VKEWLFGPDG 120
  121 LIETMTIGNW YKLLTWSTPV FQLVEGFCSL LVIQAAGQIT RWLVNRGGRS DSWMIALLVL 180
  181 SASIISSSVY FLWRVLQFPE ISNVDAALIG VSITCAVILC AWGIGSGRGN PVESSLLFAY 240
  241 VVLCIYQIFT DYQPSFPVEQ GSSPSQTGDF PPLPPIIMAS YSTLMHALSS LPSIIHAAFN 300
  301 VITAVFSAVT PSVLISLAYR IFVLYASTRI IPAVRESGAR ALSQEASLDD TDAAGQFLGF 360
  361 LSYFSPSILI AVYTSLLMQH FATTSQAMGG SGQWWSIQGG GGGNLWRWVN LACTLALYAV 420
  421 ELWLGENNDL DTGLAGHWKT D