YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GET1_ASPFC
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSLILTIFF VHVAIYLVNT VGATTIDTLL WILYLKLPTS TSRNARQQSR LKREVVQLKR  60
   61 EMNNTSSQDE FAKWAKLRRK HDKAMDEYEA MNKKLTAQKT SFDWSVKIAR WLSTNGLKIF 120
  121 LQFYYSKTPV FALPAGWFPF YVEWVLSFPR APRGSVSVQV WNSVCATAIA VMAEIVTSML 180
  181 LQLRSRSASP ASTAKAQKAQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.70
Transmembrane Helix	12	35	0.82
Cytoplasmic	36	122	0.83
Transmembrane Helix	123	141	0.76
Non-Cytoplasmic	142	159	0.71
Transmembrane Helix	160	181	0.86
Cytoplasmic	182	200	0.77