YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66849806, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARPKAIRAP TAASLPNTLR LPSSTSSLIK SFSRLSRHAL LDLVFQWLDD RNAQLFPPYL  60
   61 QKDEIENPAD DKLSPYPAAE TIEDVRNAYQ DLQDRKGGKR EVIDRILEGD WRHGITLRQL 120
  121 AMVDIRYMED HPASLRWTAF ELSRIGMDGT QSAGATTPDV SACLPRIHAT TFLSNLQQQI 180
  181 SPLVKAHYHL VRSSSLPLSF LRILVTSSPY QNPRQPPEAL MDSSRVMYVA FPDSCPFIYT 240
  241 SIATSPVAKS NTTTNHAVAT DARSLQRIVR DALPKALSRP QERYALKATS LTAKNLQALL 300
  301 ALRGPGRSNV AHGAFSIFAD AVLEGSPLDP RPSDTISPRE HFYQDLDKEN ENQEDGNTSK 360
  361 ETEPSSHVAK KRKLAVHSRF GTTGTLSSAP LDRLDVRLLD PADDEDDEHE VDHTQPSVSL 420
  421 TFVGSDVISG IRKLAELGVV DPERMPSWMT GEEAVSVAVV HRGKRVVKAG

Type	Start	End	Confidence
Signal Peptide	1	26	0.55
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	470	0.99