YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70993698, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLHNPNNWH WVNKDASAWA KTYLKEKLRT LSAEEDGVSV KISDLLTMDG DVDVSQRKGK  60
   61 VITLFDVKLQ LEYEGKTKDQ VSVSGTITIP EVAHDTEEDE YVFEIENYSD SASKQPVKDL 120
  121 VRSKLVPQIR QELGKLAPAL IAEHGKDIQH APGVDPSSGF ATPPSYPQTS KGASPAPQTT 180
  181 TTTTTTNKVA VNTTTVTASD EFRTTAEEMY TTFTDPQRIA AFTRGAPRQF DGAQVGGKFS 240
  241 IFDGNVNGEF VKLDKPKQIV QKWRLAQWPE GHFSTLEINF DQNDVDAVTQ MRVTWTGVPV 300
  301 GQEDVTKQNW DVYYVRSIKQ TFGYVILPCS SIQLLPYHVP LRSRPTSWRQ LLIALFVLFI 360
  361 AIGLALFSDR IHGVLETTY

Type	Start	End	Confidence
Non-Cytoplasmic	1	347	0.56
Transmembrane Helix	348	371	0.83
Cytoplasmic	372	379	0.36