YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66849254, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKSRPHKKK ASKSREKSVL RAGGSVSKQK MADPAILLEQ AVVLLQTGQA DAALAAAQQA  60
   61 FNSAPTNSPA QLSALNTIGE IYVELGDINA ARECFLRAVE LDPNGTIPES EGGGAEKFLW 120
  121 LAQLSEVGGK DSVQWFEKGV SALRTIIQQL EEKQDPQTAA ELAEKKKKMA NALCGVAEIY 180
  181 MTDLSWEEDA ENQCESLITE ALLVDPQAPE VLQTLASIRI SQLRQDDARA ALSRSLELWK 240
  241 DLPPEDPKVP EFATRVSLAR LLMEVAMELE ALEVLERLIL EDDQSVEAWY LGGWCLYLLA 300
  301 EKRQAPKDAE ADASPESQRQ ASLVASREWL KQSLTLYDLV QYEDERLKEH ALELVDEMNK 360
  361 ELGEDMEDDS NAEDAEGEEG EGDWEDEIED ESDEDHEMAD

Type	Start	End	Confidence
Signal Peptide	1	52	0.75
N-region	1	43
H-region	44	49
C-region	50	52
Cleavage Site	52	53
Non-Cytoplasmic	53	400	0.99