YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|159125486
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	220	0.85
Transmembrane Helix	221	244	0.78
Non-Cytoplasmic	245	265	0.70
Transmembrane Helix	266	287	0.86
Cytoplasmic	288	320	0.51
Transmembrane Helix	321	344	0.89
Non-Cytoplasmic	345	353	0.42
Transmembrane Helix	354	376	0.88
Cytoplasmic	377	395	0.46
Transmembrane Helix	396	418	0.88
Non-Cytoplasmic	419	425	0.40
Transmembrane Helix	426	446	0.90
Cytoplasmic	447	484	0.44
Transmembrane Helix	485	513	0.68
Non-Cytoplasmic	514	525	0.48
Transmembrane Helix	526	548	0.50
Cytoplasmic	549	563	0.42
Transmembrane Helix	564	598	0.78
Non-Cytoplasmic	599	628	0.71
Transmembrane Helix	629	651	0.89
Cytoplasmic	652	689	0.76
Transmembrane Helix	690	710	0.55
Non-Cytoplasmic	711	1014	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVLPTFQDS SLRFMAGRAS ELRLGHSTIG PSKVPRGLRE QTAELASFAL SLPHERGSFP  60
   61 RSLDIFQSKR QTDVAAPSSS YTSTAGDLSI VEPEPIHAPA TGSSVLTQMI RSPPSESVGD 120
  121 DTYHYGGKRC PKDAAGVENP RPVFNDGEGE NTITERTSLL NKTAPSKPFH GYGVADDIER 180
  181 QYLLGEREQG GQPRALATIR SCLRLIASPK SWNGRAVWQQ GVVYPASLLP SVFLGLLLNI 240
  241 LDALSYGMIL FPLGEPIFSD LGSDGISMFY VSTVIAQLVF SCGGSIFRGG IGSEMIEVVP 300
  301 FFHKMAMTIL LRVGEDNPKS VLATTILAFS ASSVLTGLVF FLMGTCKLGS LIGFFPRHIL 360
  361 IGCIGGVGFF LMQTGVEVSA RLSGSLELNG PTLQKLFHMD TFLLWMIPLF LAIAFLVLKR 420
  421 FVRSNFLVGG YFVTVGVVFY IVKFGARVSM DTLRSRGWVF DAPSSSNPWY HFYTLYDFSA 480
  481 VDWSAFVDTI PAMFALTFFG VLHVPINVPA LGISTGEDNL SVDRELIAHG VTNALSGFAG 540
  541 SIQNYLVYTN SLLFIASGGN SRLAGIMLAF ATMGILVVGP AIIGFIPVMV VGALIFMLGI 600
  601 ELMEEALVDT WGKLHRLEYL TVVSIVVTMG AWDFVVGIFV GIILACVSFV VQTSRKSAIR 660
  661 ATFSGKITGS TVRRPPIQQR FLKEAGQQTL IIKLAGYLFF GTIVSVESTM RGLIEEEAFE 720
  721 RRPIRFLILD FSRVYGLDFS AAEAFTRINR ILRRRNVQMT ISGLDMTSEV GKSLQNVGLL 780
  781 ASETGVEIFK DLNSALEFCE NDYLKVFYSH REALIRKKSG SPPHLEVPVS QNQLQAAEGI 840
  841 VGSPRRLYLQ QAATTTLREE ETAAMASVAW SAMRQPLPLL LQTFQGLTTK NEDFWFRACP 900
  901 YFGRVCYAAG TVLFQEGDLP DGFYLLESGM LRAEYELPQG RYFELIVGGR PCGELPFFSE 960
  961 TRRTATVKAE QDCVTWCLNA DKWKQLREEE PEIAQELLTV SLKLTSERMD SITS