YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|159125503
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPSLLDLE PRNRLPTLFE VLSRRTLAPV DLFSFYIYMR DQQRSVDYLD FWLDVSQHMS  60
   61 LCRHYVRELR RSVLVATPDL EKADSKGSSA ALDNLEHLGD IPLTEAGPSS LRRGFRDYDD 120
  121 KDADQRLSAF LRSDGHTSQH SPQSSLGSQN AARLPSNEQP PRPSSGTQNE SNSPGHTVTR 180
  181 HDIRASAEKI LYTYLLPGAE REIVLPEEMV STIINLIEDD GRDDPEVFDP AKDYVFQAME 240
  241 RDAYPGFLQA KALGNLVPLT IMIRLALALI SFGGGFWGAF YVVLRDKPRH IRCWYKIDPV 300
  301 MAYLGYSEYT FMNWAPIREP YVRKLLNKRA TATLFIALLV AAALSILFIF VPGTML

Type	Start	End	Confidence
Non-Cytoplasmic	1	261	0.92
Transmembrane Helix	262	284	0.90
Cytoplasmic	285	330	0.93
Transmembrane Helix	331	351	0.94
Non-Cytoplasmic	352	356	0.72