YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|159125562
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQSKAGRRR RSSSIIYQEP PESIEHTSDQ AALPNLNANW VNAKGAWTIH FVLIIALKIF  60
   61 YDIIPGVSQE TSWTLTNISY MFGSFIMFHW VRGIPFEFNA GAYDNLNMWE QIDNGDQYTP 120
  121 TKKFLLCVPI CLFLLSTHYT HYDLTYFTIN FLATLGVVIP KLPFVCPLRL DRVVIANLVH 180
  181 SRTACG

Type	Start	End	Confidence
Cytoplasmic	1	45	0.56
Transmembrane Helix	46	64	0.83
Non-Cytoplasmic	65	72	0.43
Transmembrane Helix	73	93	0.82
Cytoplasmic	94	123	0.47
Transmembrane Helix	124	139	0.42
Non-Cytoplasmic	140	145	0.55
Transmembrane Helix	146	165	0.69
Cytoplasmic	166	186	0.81