YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70993042, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVLSKPGTK ADIHGVAPTQ FIEKDGLAID KPNATGYTPK SKPRLLDRWL DFVVRVSGSE  60
   61 PVFFFILAGL LTWALLGIKY GTSDLWQVLI SDIQAIVSYV FDSFLVRQQL NAYDEEMTVA 120
  121 AELQSRILSH RRMLAKLGLE TDQKDPEKQA RLQSIVARHQ DAPGFSAELP TEKRFGRTIT 180
  181 WFSHLLGHLG TVALYWVGVF VWIGLGHREG YSNEWQLYMN SASSALMVFV FAFLANVRER 240
  241 HSAYARSCLN AIFQVDATLE FRLRLLTGDN IDNDVVIIPA PKVSGVQRAI FYYADLVGTL 300
  301 VGITILLIMM TIWVAIGPLL HFDANWWLII GTYAGLVGMN DGFVLRNLQA RLRGFADLEF 360
  361 EKVAVEDDKL FESVGQAMPI KEAAEKPGLT QRVSDAMNRV CAHEITVVAG FLTIVGLIAG 420
  421 ASAMKWTMTG QLLCNVPPSL IESFFMIILI TGHNSADDRK RMDLRNLYER RLHLLALVNN 480
  481 EKGPVRVPPS LKGREIVLNI LPNSTIFMVA SLYERRDHAT WRRHYVDHIS SSEPAIGEDY 540
  541 P

Type	Start	End	Confidence
Cytoplasmic	1	51	0.66
Transmembrane Helix	52	77	0.71
Non-Cytoplasmic	78	84	0.47
Transmembrane Helix	85	101	0.53
Cytoplasmic	102	180	0.96
Transmembrane Helix	181	205	0.85
Non-Cytoplasmic	206	216	0.88
Transmembrane Helix	217	237	0.94
Cytoplasmic	238	291	0.98
Transmembrane Helix	292	316	0.88
Non-Cytoplasmic	317	323	0.86
Transmembrane Helix	324	345	0.91
Cytoplasmic	346	400	0.98
Transmembrane Helix	401	423	0.87
Non-Cytoplasmic	424	433	0.72
Transmembrane Helix	434	455	0.82
Cytoplasmic	456	541	0.92