YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66848567, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRSRKSSHL GDIPGDTTAP AMSTMNEVSP VEEDAPKWDK ALQNQVTPEK ALKSQTRRRK  60
   61 NRSPLRRFKD LCLKHTWVLP LLLMSVILLA YAVNPTPANP FHSAIFLSYP QPPKTPGGPV 120
  121 MYGKGPLDFA FVGFYTIVLS FTREFLMQCV IRPWAGYCGI RGRGKTARFM EQVYTAMYFA 180
  181 IFGPFGLYVM KQTDIWYFNT TAMFEGFPHR EHVAIFKAYY LLQASYWAQQ AIVLLLQLEK 240
  241 PRKDFKELVG HHIITLALIG LSYRFHFTYM GIAVYITHDI SDFFLATSKI LNYLDSIITV 300
  301 PYFGTFVLMW IYLRHFLNLK ILWAVLTEFR TVGPYELNWE TQQYKCWISQ IITFVLLASL 360
  361 QAVNLFWLFL ILRILKNYIF NSVKKDERSD DETEEELEHE AESRATLATG AEQPLLTTRN 420
  421 TNKAPQVFVN GEPYGAKTHS

Type	Start	End	Confidence
Cytoplasmic	1	71	0.99
Transmembrane Helix	72	93	0.91
Non-Cytoplasmic	94	126	0.93
Transmembrane Helix	127	147	0.86
Cytoplasmic	148	171	0.85
Transmembrane Helix	172	190	0.89
Non-Cytoplasmic	191	215	0.86
Transmembrane Helix	216	236	0.69
Cytoplasmic	237	247	0.73
Transmembrane Helix	248	267	0.82
Non-Cytoplasmic	268	292	0.65
Transmembrane Helix	293	313	0.88
Cytoplasmic	314	346	0.58
Transmembrane Helix	347	371	0.84
Non-Cytoplasmic	372	440	0.56