YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70991893, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPRSINTDD CCSVRRSSFS IFSCLVLCST LLLGVSIIFK TPPRIFASLP AASSSPNYTH  60
   61 TANMSYQQER YIAELAVQRA TLLTQKVFHE KAKGTVSKDD KSPVTIGDFG AQALIIQALR 120
  121 KNFPNDEIVA EEEANSLRED KALSAEIWRL VKDIRLGDNE SNELLGGLLP SEDAMLDIID 180
  181 QGKSAGGPKG RIWALDPIDG TKGFLRGGQY AVCLGLIEDG DVKVGAIGCP NLPVDDSVAM 240
  241 TASIGVDQTD GAGMGVLFSA IKGQGSISRP LSNGALAESK PISMRPVPDI KQAVFCEGVE 300
  301 AAHSAQGDNA AVAQLLGITS PSVRLDSQAK YCSIARGAGD IYLRLPVRKD YQEKIWDHAA 360
  361 GDLIVREAGG QVTDIYGQRL DFSKGRTLAA NKGVVAAPEA IQDQVISAVK TVLKL

Type	Start	End	Confidence
Cytoplasmic	1	18	0.90
Transmembrane Helix	19	39	0.90
Non-Cytoplasmic	40	415	0.99