YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70991843, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASARSLMRL STGRSLASAV RSSQTCRAFS STVQLASKVP EPENMRQAHR PPQGALRAPV  60
   61 VNPADKYQDK TESLHKYGQY VMSCLPKYVQ QFSVWKDELT IYVPPTGIIP VMSFLKYHTA 120
  121 AEFTQISDIT AVDFPTRDQR FEVVYNLLSI RYNSRIRVKT YADEASPVPS VTGLYEGALW 180
  181 YEREVYDLFG VFFSGHPDLR RIMTDYGFDG HPLRKDFPLT GYTELRYDEE KKRIVIEPLE 240
  241 LTQAFRNFEG GTTAWEPVGS GVDRKPDSVC LVTNSCEAME TNMVQYSSSS PPLSRRRRRR 300
  301 MKRNRAPECI RISLSRCLYV HTAYTSTNLS IQTR

Type	Start	End	Confidence
Signal Peptide	1	28	0.89
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	334	0.99