YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70991619, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLGGSVPM FRSLAPRFSK DFFTCRQCLG RTQTYATKSL FRKQFAGLSF GQKSSNATPK  60
   61 AFSVTATKFF SPILRRSVAG SAVAGALEDG ASQAKSSFPK VSDKIVAYWL LGSAASVFGI 120
  121 VVFGGLTRLT ESGLSITEWR PVTGSLPPMN AEDWESEFAK YRASPEYQQL NPNMNLSEFK 180
  181 SIYYMEWIHR LWGRFVGLSF VLPAIYFVAK KKVSKPMSLR LAGIAGLIGF QGFIGWWMVK 240
  241 SGLKEDLFAQ GSHPRVSQYR LTAHLGAAFI CYTAMLWNGL AILRSHRLLA DPEAGIKLLD 300
  301 SLRDPKLKIF RRSVAGLALL VFATAMSGAL VAGLDAGLIY NEFPLMGNGL APPKSELLDE 360
  361 RYSRHEDRSD LWWRNMLENP SLVQLDHRIM AMTTFTSIMA LWAYSRRSPT MKRLLPPAAR 420
  421 KGLHGVVAFA WVQVGLGIST LLYLVPTPLA SAHQAGSLFL LTWVLVLGSR IWHPSRTAKL 480
  481 LQMAAKARGQ AVRNATAQAA HKL

Type	Start	End	Confidence
Cytoplasmic	1	104	0.99
Transmembrane Helix	105	127	0.93
Non-Cytoplasmic	128	190	0.97
Transmembrane Helix	191	209	0.96
Cytoplasmic	210	217	0.91
Transmembrane Helix	218	239	0.92
Non-Cytoplasmic	240	260	0.94
Transmembrane Helix	261	281	0.93
Cytoplasmic	282	314	0.94
Transmembrane Helix	315	339	0.88
Non-Cytoplasmic	340	384	0.98
Transmembrane Helix	385	405	0.91
Cytoplasmic	406	422	0.95
Transmembrane Helix	423	445	0.91
Non-Cytoplasmic	446	451	0.81
Transmembrane Helix	452	473	0.91
Cytoplasmic	474	503	0.99