YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66848242, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACTTQSMTL ESYPDATSTS FATTPSEGTG LLRDRRRRHS FHTARKLSCD YDGDAIFLRV  60
   61 ELFLAELERR MHWIEQYRKS HMVHIDSSLR RAYATLEAVR DSCSYASGEL MGGGKKRAKI 120
  121 LVETLEDRYN DALATKETLE QKAQAGVRLM ESFLVELESR AHAVRDRGIY GALDDGWKAV 180
  181 DSKLVHAREV VDEGIEQARR AKDSLRESIN RAILLAQEQR LITYADLPHP WRINPHILQG 240
  241 YRFSSSKVEC LMSVFSVCNE TVNIWSHLIG LFIVLSVAFY FYPLNPNFHL STKTDVAIAA 300
  301 VFFFAACKCL VCSTLWHTMN SIANQPLMER FACVDYTGIS LLVAASIVTT EYTAFYCEPV 360
  361 SRWTYILLTM SLGIGGVILP WHPTFNRNDL AWARVAFYVT LALTGFAPLF QLTYTRGFVW 420
  421 CLYFYAPVVK SILVYFAGAC IYASQIPERW RPGLFDYFGG SHNIWHIAVL GGILFHYCAM 480
  481 QDLFANAFVR AKGECPSLTA

Type	Start	End	Confidence
Cytoplasmic	1	261	0.70
Transmembrane Helix	262	284	0.88
Non-Cytoplasmic	285	295	0.65
Transmembrane Helix	296	318	0.90
Cytoplasmic	319	331	0.64
Transmembrane Helix	332	355	0.82
Non-Cytoplasmic	356	362	0.60
Transmembrane Helix	363	383	0.93
Cytoplasmic	384	389	0.61
Transmembrane Helix	390	414	0.83
Non-Cytoplasmic	415	421	0.58
Transmembrane Helix	422	444	0.85
Cytoplasmic	445	461	0.51
Transmembrane Helix	462	480	0.86
Non-Cytoplasmic	481	500	0.57