YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70991401, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPQKSVTEV PRSLLPRLTW NGSSARITVA PPQGNPLSTL RSQPQQRIQN LSPVCPQLRS  60
   61 LSLYPHKARF FSAASRDFSP ATLVARSPST SSSTPKNRPA LEDLNNPIRY NGVYVATFKP 120
  121 ARRAFHASAS LQREHHFDTL RFVQRLKDEG FSEAQAVAMM RVLNDVIQES IQHLTRTMVL 180
  181 REDTERSAYT QKVDFAKLRS ELLNADSTEA QLTRSSHEKI AADLAKLNSR LRDEIGRTQA 240
  241 SVRLDLNLEK GRIREEANGQ EMRIKETETR IEQEVAGLRE RVEAVKFSTL QWLMGVCTGT 300
  301 AALILGAWRL FM

Type	Start	End	Confidence
Cytoplasmic	1	288	0.53
Transmembrane Helix	289	311	0.88
Non-Cytoplasmic	312	312	0.55