YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|159130988
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	74	0.54
Transmembrane Helix	75	94	0.61
Cytoplasmic	95	127	0.74
Transmembrane Helix	128	147	0.60
Non-Cytoplasmic	148	160	0.62
Transmembrane Helix	161	183	0.80
Cytoplasmic	184	193	0.53
Transmembrane Helix	194	228	0.68
Non-Cytoplasmic	229	244	0.47
Transmembrane Helix	245	278	0.76
Cytoplasmic	279	298	0.61
Transmembrane Helix	299	323	0.86
Non-Cytoplasmic	324	618	0.73
Transmembrane Helix	619	640	0.94
Cytoplasmic	641	658	0.82
Transmembrane Helix	659	679	0.88
Non-Cytoplasmic	680	687	0.64
Transmembrane Helix	688	706	0.92
Cytoplasmic	707	716	0.79
Transmembrane Helix	717	739	0.89
Non-Cytoplasmic	740	759	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPICGVGM FTPERKLISS SHLIIPRTRT RTQSRGLRYG GHTHPVSPAE RHILSPANDP  60
   61 FTEQANSFYT ILDSWEPFIA PIVLTAFAVF TRMYRIGRSN IVTWDEAHFG KFGSHYLKRE 120
  121 FYFDVHPPLG KMLVGLSGLL AGYNGSFEFK SGEKYPEDVN FTFMRVFNAA FGVACVPLAY 180
  181 YTARELGFRK ATVWLISLMV LFENSYATIS RFILLDSMLL CFTFMTTMCW AKFHRLQHAS 240
  241 FSGQWFTWLF LTGISIGCVC SVKWVGLFCT ALVGLYTIED LWNKFGDLRM PKTVLVNHLL 300
  301 ARVVGLIIIP AVVYMLSFYV HFWILENSGP GDAQMSSLFQ ANLKGTEVGK DSPLEIAVGS 360
  361 RVTLKNMGYG GGLLHSHVQT YPDGSNQQQV TCYHHKDANN DWFIYPNRHE PEYDASGPLS 420
  421 FVGDGDVIRL IHGQTGRNLH SHAIPAPITK SQYEVSCYGN ITIGDEKDHW AVEVVDDVAS 480
  481 RDRSRIRTLT TAFRLRHIVL GCYLRAGNVN LPQWGFKQIE TTCVKENNPR DVYTHWNVES 540
  541 HFNDRLPPGD PGSYKSPFFK DFIHLNVAMM TSNNALVPDP DKQDDLASKF WQWPILNVGL 600
  601 RMCSWDDNTI KYYLLGNPFV YWGSTFSLGV FGLLIFWYLA RWQRGYKDLN QADIDHIHYS 660
  661 GFYPLLGWIL HYFPFIIMAR VTYVHHYYPA LYYAILTFGF CVDWLTQKMS PVARGSLYAF 720
  721 LYVIIIGMFV HFRVIVFGIE GPSQQWANLN WLSGWRIAN