YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66848132, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPATTADTLS LVTRTVTVAP LVLLSVADHY GRSAKGTRKR VVGVLLGENL GQTVRVSNSF  60
   61 AVPFEEDEKD PSVWFLDHNF VESMRDMFKK INAREKLVGW YHSGPKLRAS DLEINELFKR 120
  121 YTPNPLLVIV DVQPKEVGVP TDAYFAVDEI KDDGTTTSRT FVHTPSVIEA EEAEEIGVEH 180
  181 LLRDIRDVAV GTLSTRITSQ LQSLQGLHLR LRDIGQYLQK VLDHELPVNH AILGNLQDVF 240
  241 NLLPNLSTPA ATSRLSGSEP QMENSELARA MSIKTNDQLM AIYISSLIRA ITAFHDLIEN 300
  301 KIQNRQQQEE NESKKEQEAN AAKGDKEGAK KANGMNGEPK EDQEKSKKKS

Type	Start	End	Confidence
Signal Peptide	1	27	0.48
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	350	0.96