YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66847969, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRERSPPS TASTTTMRPP TTALLIYPVT LLVGSLFSIL SPTARGSRQS RPARPASLAP  60
   61 SITTDVNLSP PNPVNYFARK DNIFNLYFVK VGWIWTTLAF LSLLVSQPAY TAPSAHQPRR 120
  121 LVQAALRYSV ATLVWYLMTQ WFFGPPIIDR SFVITGGKCE RVVAETSGNP AVAVAQAGSV 180
  181 SAGLEKLFTA AACKAAGGSW TGGHDVSGHV FMLVLATSML VFEAVGATRA VSVGAEADKK 240
  241 VDGEVDGQSE EEQGDWMRTW SLRLVGAVVG LGWWMLFMTS IWFHTWLEKW SGLLIALGTV 300
  301 YVVYVLPLSV PSWRDIVGIP GV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.86
Transmembrane Helix	21	40	0.94
Non-Cytoplasmic	41	90	0.86
Transmembrane Helix	91	111	0.86
Cytoplasmic	112	123	0.84
Transmembrane Helix	124	144	0.88
Non-Cytoplasmic	145	206	0.91
Transmembrane Helix	207	227	0.87
Cytoplasmic	228	261	0.86
Transmembrane Helix	262	283	0.90
Non-Cytoplasmic	284	289	0.73
Transmembrane Helix	290	310	0.88
Cytoplasmic	311	322	0.79