YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66847954, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSLAGSFVG LLFLLSAPVT SVYAASEPTG KKDGLSPCVV RSPATGLYYD LNAISVPRPD  60
   61 PSDGKKSNKN APRESWHAKG HDYHANFTLN ICAPVVEDIK DVVGVERDRW KNVSAYYEKE 120
  121 GKIYSIGEQA AQPLFRGRKL VLNYTNGSPC PGEQIGHSSR NKSTIMSFLC DRDALSHQAV 180
  181 ASFVGTMDQC TYFFEVRSAA ACGSIGHAHG DGLGPGGVFG VIALIAVAAY LVGGCAYQRT 240
  241 VMHQRGWRQC PNYSLWAGIF DFVKVSALAL IPFRMCLGFC LNPIDMFIIV FSSLGRLFRV 300
  301 RRSSNLGHGR ADGSSGGFIG AIGGRRGRDN YASDVDAENR LIDQLDETWD D

Type	Start	End	Confidence
Signal Peptide	1	24	0.99
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	213	0.99
Transmembrane Helix	214	237	0.85
Cytoplasmic	238	252	0.85
Transmembrane Helix	253	273	0.82
Non-Cytoplasmic	274	278	0.66
Transmembrane Helix	279	300	0.83
Cytoplasmic	301	351	0.90