YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66847808, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.85
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.84
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	597	0.97
Transmembrane Helix	598	622	0.87
Cytoplasmic	623	631	0.87
Transmembrane Helix	632	656	0.84
Non-Cytoplasmic	657	687	0.82
Transmembrane Helix	688	710	0.88
Cytoplasmic	711	729	0.82
Transmembrane Helix	730	754	0.78
Non-Cytoplasmic	755	771	0.76
Transmembrane Helix	772	794	0.84
Cytoplasmic	795	810	0.71
Transmembrane Helix	811	834	0.91
Non-Cytoplasmic	835	855	0.75
Transmembrane Helix	856	875	0.93
Cytoplasmic	876	881	0.71
Transmembrane Helix	882	903	0.92
Non-Cytoplasmic	904	910	0.75
Transmembrane Helix	911	931	0.92
Cytoplasmic	932	950	0.67
Transmembrane Helix	951	975	0.88
Non-Cytoplasmic	976	995	0.75
Transmembrane Helix	996	1018	0.89
Cytoplasmic	1019	1038	0.75
Transmembrane Helix	1039	1063	0.85
Non-Cytoplasmic	1064	1067	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYYRPALSSQ FLHLAFSSLQ SDARTPQTDS NAPILQPPCR FVLRPTRQPL ISPAQQLCGD  60
   61 PPQPRRRSPA PSSSSPTTND VLSIGRVATS ESVLFFSQNS LPVETVPSNA VGRTVARIAS 120
  121 ATGAYEQELE HDGHDQSFEL EEFHTRNRYP LVTRERTSSN HFVSLESDSH EQVQESEKYT 180
  181 PPGEKSGQDH RANNPRVRFW AEALRRRQSP KESARGQRTA KMKFSHSIQF NAVPDWSAYY 240
  241 IAYSNLKKLI YSLEQQARKA NGQAQSDVES APLLSETPTP EAVFRRALNA ELEKICSFYE 300
  301 VKESEILKEV EDVVRDTEEY SSKTDGADVD PMSDAMIKSR RMSSNSRPRT SGSYRDYAEE 360
  361 ETEDDDDAAD SDDEHHPPTG QGGVPSSGRS RSDLSDSRFM ADSRILGFDR RGSGGHDEHC 420
  421 KDPGFLELYN EGLSLRQRAV NAYVSLCGLK SYIQLNKTGF SKALKKFDKI LDCNLRREYM 480
  481 SSTVSPAYPF TDSTMKKIDD VIGRVEQLYA DLITGGDLAL AKRELRLHLR EHVVWERNTV 540
  541 WREMIGIERK AQAANVGIRR TLLGMDEDPA TARRQGDEQE AAAKEIKTPF GRYSVPEWLC 600
  601 SLSFGTLIVI LAVFIILLYA PIMDKPEQQN CLAMLVFVSL LWATEVIPLF VTSLLIPFLV 660
  661 VMLRIMKSAD KPYHRLGPKD ATGAAFSAMW TPVIMLLLGG FTIAAALSKY DIARRMAMYV 720
  721 LSRAGSNPKV VLLTNMFVSM FLSMWISNVA SPVLCYSIIQ PLLRNLPPDS NFAKALVLGI 780
  781 ALAANVGGAA SPIASPQNII ALQNMYPSIS WGTWFFISLP VCIISILLIW LLLLATFKPG 840
  841 RDTTIVPIRP VKDQFSGVQY FVTIVTLSTI GLWCVSHQLE HVFGDMGVIA IIPMVLFFGT 900
  901 GILNKEDFNN FLWTIIILAA GGLCLGKAVT SSGLLHTIAK AITARVDHFN LYGVLLVFSA 960
  961 LILVMATFIS HTVAALIMLP LVRQIGVGMD DPHPNLLVMA SALMCSVAMA LPTSGFPNMT1020
 1021 AIMTEVPQTG QRYLHVRHFF TRGIPASLMS WAVIVTIGYG LMYIAGL