YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66847348, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	52	0.98
Transmembrane Helix	53	75	0.92
Cytoplasmic	76	82	0.88
Transmembrane Helix	83	103	0.93
Non-Cytoplasmic	104	144	0.95
Transmembrane Helix	145	165	0.93
Cytoplasmic	166	172	0.87
Transmembrane Helix	173	195	0.89
Non-Cytoplasmic	196	207	0.83
Transmembrane Helix	208	228	0.92
Cytoplasmic	229	240	0.86
Transmembrane Helix	241	261	0.89
Non-Cytoplasmic	262	273	0.76
Transmembrane Helix	274	294	0.93
Cytoplasmic	295	302	0.84
Transmembrane Helix	303	321	0.93
Non-Cytoplasmic	322	327	0.64
Transmembrane Helix	328	347	0.89
Cytoplasmic	348	358	0.86
Transmembrane Helix	359	378	0.88
Non-Cytoplasmic	379	406	0.83
Transmembrane Helix	407	430	0.93
Cytoplasmic	431	562	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSQPGVAPY VPDYASYNWT GAPANYAQLA TNDIGGDSRT ENVNKWFQSG DQAYIIVASA  60
   61 MVMVMIPGLG FLYSGLARRK SALSMIWACM ASFSVVTFQW YFWGYSLAFS PTATNGYIGN 120
  121 LRNFGLMKTL ADPSPGSPLI PNLLYAFYQM QFCGVTAAII MGAVAERGRL LPAMVFTFIW 180
  181 ATIVYCPMVC WVWNVNGWAF KYGVLDYAGG GPVEIGSGMA ALAYSMVLGR RQERMMLNFR 240
  241 PHNVSLILLG TVFLWFGWLG FNGGSSFGAN IRATVACWNT NLTAAFGAIT WVLLDWRLAR 300
  301 KWSMVGWCSG TISGLVAATP ASGFLTPWAS VILGIVTGVV CNYATKVKYW IRIDDSMDVF 360
  361 AEHGVAGIIG LIFNALFADD AIVGLDGVNT GTGVGGWVIH NYKQLYVQIA FIVASCAYSF 420
  421 VVSAIIAYVI NAIPGLKLRA SEEAELLGMD DDQLGEFAYD YVEVRRDYLA WTPQKHDQLE 480
  481 DGHEIPHAAR YGIGEHSEML EGQTPVGIDS RGCSEGDSGI QEIKIAPAPR PVAEHNPPAQ 540
  541 VQETQVPPAA PQIDEKRDGS SQ