YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66847033, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIPLPQVHS VVDCASFNRT VLPFLSQLTT LPAQLQVAAS TKDVDSLKDI YLSTNPFISA  60
   61 LGFTLVLWVL FAVAAEFNRN YSQVDRFWSI LPSVYTVHFV AWARLWGIKN QSLDTIALIT 120
  121 LLWGIRLTFN YWRKGGYQIG SEDYRWEIVK SHINNRFFLF LFNVTFISLI QPLLLLLVTA 180
  181 PTYNFILLSR LPGAEPFGLP DLAFSRLAFF FLIIEYFADQ QQWNFQSAKK EYQKTARIPD 240
  241 QYKGQFTPED LERGFVVSGL WSLSRHPNFV AEQAIWLTLY LWNCYRTGSY IQWTGLGILG 300
  301 YMLIFQSSTR LTESISAGKY PEYSEYQARV GRFIPRFSVK PKYNGSKKKT SRSKTESAGT 360
  361 ATQEGKKSQ

Type	Start	End	Confidence
Cytoplasmic	1	55	0.62
Transmembrane Helix	56	75	0.91
Non-Cytoplasmic	76	86	0.53
Transmembrane Helix	87	106	0.78
Cytoplasmic	107	156	0.45
Transmembrane Helix	157	180	0.83
Non-Cytoplasmic	181	196	0.59
Transmembrane Helix	197	218	0.69
Cytoplasmic	219	288	0.52
Transmembrane Helix	289	305	0.65
Non-Cytoplasmic	306	369	0.54