YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|159128758
Protein type:	Globular with Signal Peptide
Type Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRSMMPRAT PRAALRTSGP QTIPSSFVAA PSLSVYGRFR RGYASETEHD VVIIGGGVAG  60
   61 YVAAIKAGQE GLKTACIEKR GRLGGTCLNV GCIPSKSLLN NSHLYHQILH DTKKRGIEVG 120
  121 DVKLNLEQMM KAKDTSVEGL TKGIEFLFKK NGVDYIKGTG AFVDEHTVKV NLLDGGEQTL 180
  181 RGKNIVIATG SEATPFPGLN IDEKRIITST GALSLKEVPK KMVVIGGGII GLEMASVWSR 240
  241 LGADVTVVEF LGQIGGPGMD ADIAKQAQKI LQKQGIKFKT NTKVTKGDDS GATVKLSIEA 300
  301 AKGGKEETLD ADVVLVAIGR RPYTEGLGLE NIGIDKDERG RLVIDQEYRT KIPHIRVIGD 360
  361 CTFGPMLAHK AEEEAVAAVE YIKKGHGHVN YAAIPSVMYT HPEVAWVGQN EAEVKAAGIK 420
  421 YRVGTFPFSA NSRAKTNLDT EGQVKFIADA ETDRILGVHI IGPNAGEMIA EATLAVEYGA 480
  481 SCEDIARTCH AHPTLAEAFK EAAMATYSKA IHF

Type	Start	End	Confidence
Signal Peptide	1	37	0.62
N-region	1	28
H-region	29	34
C-region	35	37
Cleavage Site	37	38
Non-Cytoplasmic	38	513	0.99