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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|70986979, gi|...
Protein type: Transmembrane
Type Confidence: 0.53
Topology Confidence: 0.44
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAASLSGPA TAGFSYALLL NFLTFFQAVP TVGLSFTSVS EPHLDLSPLG RVAFTGDFDA  60
   61 VSIYSYTEQS KTASVHDAGQ SILTPLPNGA LTALASSDAH IRAMCAFTRK DGTYEGIFVG 120
  121 GNFTTIGGVE TKGAALYKPD SNEVTALPGL SGSVSALLCD QETNSVYVGG YFKYENTSNA 180
  181 VAWIGGEGWK TLPFDGLNGP VESILKNDDG HVIFAGSFDG VGNSTSSKKK EQIVNLQDAT 240
  241 ITSDAVSSRS GYSDPRNVIC QTSGADGEGK TWLLADTSPG FWRADMGFQY RPTKLRLYNT 300
  301 HFEGRGTKTF LFRRLPDNGI MNFTYTDPDT GYDVHCDSTC PLSDRADEKY RDFEFVNVVG 360
  361 MSGFQIEISD WYGSGAGLNG IELFQEDIFA YAVDAFNEPT CASIKYPSKA TRTGSWSTTE 420
  421 SGQSSSKYLT AHVTDSTADS ASVVFEPDIN QSGNYSILLY TPGCIQDGTC GSRGVVNVTA 480
  481 TVTTDSDQHI QTVIHQTNLY EKYDNIYTGH VDASDSSFRP QVKLTTVAGQ GDITVVASRV 540
  541 EFKLTNAASN STSGDLNGLF EYDPASKDTS ENLTQSVVNA AGLQLDSRAS VKTLAKHDNR 600
  601 IYAGGNFSDS SIHNIMFFGD GNATAMPGGG LDSEVTTMAV LDDFLYVGGN FTDTSDGGNP 660
  661 NLKHIAAYSF RSKTWSSLGG GVNGPVDRII PLQLNVSMDL NETVVGVSGG FSRILSFGNE 720
  721 SAFDVSGFAV WVPSRKNWLQ NLNISQIAYT GQLASYAKYE NTTILAGNLA SSGIAAAGAV 780
  781 ALLYNDGMSL DPLLTKVGGT DTSAGTFTGT YDTSSGRNLT ILGGHFTTIA SDGSSVQNLA 840
  841 ILNGADNTIR GIASGLDSNS TFLALAVSDD TLFAGGNVTG TVGNSMINGF VAYNLKNESF 900
  901 VENVPPPFTG KDVSVNAIAF RPGTTEIYFG GNFQTAGALP CPAVCFYDTT EAQWTRPGVT 960
  961 LYGNVLALKW ISNKQLIAVG NLTVSGNQTV VATYSPKDQS WEPLAGTSTA DNLGTVTAFT1020
 1021 PANTDVSRFW LAGESKNGSS FLASYDGSSL HFAGSIFGDG TTIRSLEILP LSQKHRDVSV1080
 1081 LNNDQILLIT GQLVIPDFGN ASAALFNGTD LTPFLLSSRW DGQSGSHHHS NGIVVLVAFC1140
 1141 CALGCVFLIV IAGVIFNKIQ RRRQGYMRAP QAYGTDRPST MRRVPPEYLF NTLKHPNPGT1200
 1201 PVL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle