YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70986862, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAKPADASR PRAGDPKKVH IADTAITRQN WYKHVNWLNV FLIIGIPLYG CIQAFWVPLQ  60
   61 LKTAIWAVVY YFFTGLGITA GYHRLWAHCS YSARLPLRIW LAAVGGGAVE GSIRWWARDH 120
  121 RAHHRYTDTD KDPYSVRKGL LYSHIGWMVM KQNPKRIGRT DITDLNEDPV VVWQHRNYLK 180
  181 VVLVMGLVVP MLVAGLGWGD WFGGFIYAGI LRIFFVQQAT FCVNSLAHWL GDQPFDDRNS 240
  241 PRDHVITALV TLGEGYHNFH HEFPSDYRNA IEWHQYDPTK WTIWIWKQLG LAYDLKQFRA 300
  301 NEIEKGRIQQ LQKKIDQKRA KLDWGIPLDQ LPVMEWDDYV EQAKNGRGLI AIAGVVHDVT 360
  361 DFIKDHPGGK AMINSGIGKD ATAMFNGGVY NHSNAAHNLL STMRVGVIRG GCEVEIWKRA 420
  421 QKESGEYVRD ESGQRIIRAG QQVTKIPDPI PTADAA

Type	Start	End	Confidence
Cytoplasmic	1	34	0.78
Transmembrane Helix	35	57	0.90
Non-Cytoplasmic	58	63	0.69
Transmembrane Helix	64	86	0.89
Cytoplasmic	87	96	0.69
Transmembrane Helix	97	117	0.73
Non-Cytoplasmic	118	178	0.54
Transmembrane Helix	179	202	0.83
Cytoplasmic	203	207	0.41
Transmembrane Helix	208	231	0.61
Non-Cytoplasmic	232	456	0.56