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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|70986621, gi|...
Protein type: Transmembrane
Type Confidence: 0.57
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTLDPHLYT VAWIAPLEIE VQAARHMLDK VHSGGFPVGP GDDYLFHAGE IHGHNVVIAT  60
   61 FAAGQRYGTN SAASLASHIR KFFPNLWFGL LVGVAAGLPN HSCSPPRDIR LGDVIVAYSP 120
  121 PSGDSPAIVP YGLGKQKGGD NFELLCNGHS LPQTQRIVGS AIGKLKAENR EAQVILGYYR 180
  181 DIPETFTKFP DPGQENDVLY LSDDNLPLPR KRRPDAERTR VWYGSIGSGD QLLKSSRDRD 240
  241 KLRDRYNVIG LEMEAAGVMN EIPVGNIRGV CDYGDERKNK EWQPYAAAMA AAFAKAVLSE 300
  301 IPPKCVAQSS DVKTAFTDKD NSCLRDLLVV DPETELRRIE ATKGGLLDDS FRWVLGNTEF 360
  361 RKWRRRQQSQ LLWIKGDPGK GKTMLMIGII KELVLQVQSQ PSRSIAYFLC QATDPRLNNA 420
  421 TSILRSVIYM LVQQQPHLIS RLRKRYDANP NLFESANAFY SLSAIFENMI HDSTQATIYL 480
  481 LVDALDECET GLSDLLKLIA RTKFISAAEV KWIVSSRNRD EIEQELEFGT EEASLSLELN 540
  541 ASHVSNAVAA FIDDRVSRLK ALHRNGALLK QVKEQLRQKS DGTFLWVALV IQEMQKCRRS 600
  601 AAIVELLERT PQGLIPLYDR MLQQIQLFQG QDHELCILVL SIVTLAYRPL HLHELCLLAG 660
  661 LQKQQYGSDD LENIVGMCGS FLTIRGNNVY LVHQSAKDYL SDAKVSAAIF PHGPSAIHHR 720
  721 IFRESLQSLS AKLRRNIYSI NNPGATISEI ATLQPQPDPL FNLQYSCIYW LDHFIHSKSL 780
  781 ERPESSDDQI SDFFKQHLLH WLESLGLIGE LRHGILSLRK LSACQSQHQD IFREAERFAS 840
  841 TNAVIIQEAP LQTYSAALVF CPRENLSKRM YWNQRFNFIE QAYVMHESWD PCIQVLEGHE 900
  901 NSVNAVAFSP DGQTVASASD DKTIRLWDAA SGAEKQVLKG HENWVNAVAF SPDGQTVASA 960
  961 SNDMTIRLWD AASGAEKQVL KGHEKSVNAV AFSPDGQTVA SASNDMTIRL WDAASGAEKQ1020
 1021 VLKGHEKSVN AVAFSPDGQT VASASFDTTI RLWDAASGAE KQVLEGHENC VRAVAFSPDG1080
 1081 QTVASASDDM TVWLWDAASG AEKQVLEGHQ NWVRAVAFSP DGQTVASASD DKTIRLWDAA1140
 1141 SGAEKQVLKA HKKWVRAVAF SPDGQTVASA SDDKTIRLWD AASGAEKQVL KGHEKSVRAV1200
 1201 AFSPDGQTVA SASFDTTIRL WDAASGAEKQ VLKGHENSVN AVAFSPDGQT VASASDDKTI1260
 1261 RLWDAASGAE KQVLKGHENW VSAVAFSPDG QTVASASFDT TIQLWDAASG AEKQVLKGHE1320
 1321 NSVNAVAFSP DGQTVASASN DTTISNDTTI RLWDAASGAE KHKHHLDVVV TTLSFPDNSC1380
 1381 LNTDRGSLSL NHQACNFSIE RPENEIFIHK KWVTRSGQRL IWLPPDFRAT CTVTSGNNVV1440
 1441 LGHASGGLTF LWLN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle