YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70985120, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALEFLQNLP RPTIDRPFGI HLWPIFDKAF ETVVGYPASE FKFVEGVTPM STFKETAIAL  60
   61 VAYYIIIFGG RELMKNRPAF KLNTLFMIHN FYLTAISATL LALFIEQLLP TLYRHGLFFT 120
  121 ICDHQGGWTQ PLIVLYYLNY LTKYLELLDT VFLFLKKKPL TFLHTYHHGA TALLCYTQLI 180
  181 GLTAVQWVVI DINLLVHVVM YWYYFQSARG IRIWWKEWIT RLQIIQFVID LGFVYFASYT 240
  241 YFSSTYFPWA PNMGKCAGEE FAAFSGIAII SSYLFLFISF YIATYKKTAK TGRPRRNTGK 300
  301 QSLVDMKNFE VPSVTPAANS KATSNGAAVA SGRANGPVTR SRKA

Type	Start	End	Confidence
Non-Cytoplasmic	1	50	0.48
Transmembrane Helix	51	70	0.55
Cytoplasmic	71	85	0.78
Transmembrane Helix	86	109	0.84
Non-Cytoplasmic	110	186	0.59
Transmembrane Helix	187	205	0.91
Cytoplasmic	206	221	0.90
Transmembrane Helix	222	242	0.90
Non-Cytoplasmic	243	260	0.91
Transmembrane Helix	261	285	0.90
Cytoplasmic	286	344	0.99