YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66845237, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.63
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRGVLIFLI VNLLIISFLV RSVFTLLSLL VEDASADAIR HAELPSPNSS LIEQRPQIIP  60
   61 KIIHQTYKNE TIPEVWREAQ QSCKDLHPDY EYILWTNEKS REFIKNEYPW FLDTFDGYKY 120
  121 PIQRADTIRY FVLAHFGGTY IDLDDGCNRR LDPLLSYPAW VRRTVPTGIS NDAMGSVPQH 180
  181 PFFLRVIELL KSYDRSWLLP YITVMYSTGP LFLSVIWKEY MQDKPSEAAR VRILMQDEYN 240
  241 KYSWSFFTHH VGNSWHGKDA RLIFWMGQHW MFLTVLGFIL ASVVGFCLWW VYGRMILLSS 300
  301 KYRYRYSKLP GLGRLSSPTR RSRGVMPTLL RRVSFKEDEE SAHVTETSFE LYSRRD

Type	Start	End	Confidence
Signal Peptide	1	25	0.61
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	269	0.68
Transmembrane Helix	270	293	0.93
Cytoplasmic	294	356	0.76