YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52548218
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIVLEIWDT FIGDRVYSAL LPLSLSSTVS LPGLTNAANS SLSLFGASKP FVYEPATQLF  60
   61 RLEPSKYAYL SAWPRNNIYR QFLSFFLIVW IFGIIVYFIS ATLSYIFIWD KTTVKHPKFL 120
  121 KNQIPMEIAQ TMRSMPVMSL LTAPFLVAEV RGYAKLYDSV DEEPFPYYSI LQFPLFIAFT 180
  181 DFCIYWIHRG LHHPLIYKSL HKPHHKWIMP SPFASHAFHP LDGWSQSVPY HVFPFIFPLQ 240
  241 KLAYVFLFGF INLWTVMIHD GEYVANSPII NGAACHTMHH LYFNYNYGQF TTLWDRLGGS 300
  301 YRKPNEELFR RETKMDEAEW KRQTKEMETI LKTVEGEDDR KYLSQEEAKK DL

Type	Start	End	Confidence
Cytoplasmic	1	15	0.82
Transmembrane Helix	16	38	0.61
Non-Cytoplasmic	39	85	0.72
Transmembrane Helix	86	109	0.89
Cytoplasmic	110	128	0.74
Transmembrane Helix	129	148	0.73
Non-Cytoplasmic	149	167	0.76
Transmembrane Helix	168	188	0.89
Cytoplasmic	189	206	0.77
Transmembrane Helix	207	221	0.63
Non-Cytoplasmic	222	236	0.58
Transmembrane Helix	237	256	0.76
Cytoplasmic	257	352	0.77