YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPI7_ASPFU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.88
Transmembrane Helix	10	31	0.91
Non-Cytoplasmic	32	402	0.67
Transmembrane Helix	403	425	0.89
Cytoplasmic	426	431	0.46
Transmembrane Helix	432	453	0.91
Non-Cytoplasmic	454	459	0.48
Transmembrane Helix	460	477	0.66
Cytoplasmic	478	512	0.58
Transmembrane Helix	513	531	0.83
Non-Cytoplasmic	532	537	0.43
Transmembrane Helix	538	558	0.87
Cytoplasmic	559	617	0.47
Transmembrane Helix	618	639	0.65
Non-Cytoplasmic	640	650	0.69
Transmembrane Helix	651	675	0.85
Cytoplasmic	676	695	0.77
Transmembrane Helix	696	720	0.87
Non-Cytoplasmic	721	732	0.68
Transmembrane Helix	733	757	0.63
Cytoplasmic	758	767	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFKGEHRAI LIANILIVVA ISIFSSGFFP YKSLLPGLAT FAETNIGTVA PKVFDRVIFM  60
   61 VIDALRSDFV YSKTSGFSFT QSLIRSGAAL PFTAHASSPT VTMPRLKAMT TGSVPSFLDV 120
  121 ILNIAESDTS STLAYQDTWL AQIKAQGGQL VMYGDDTWIK LFPGVFDRCD GTTSFFVSDF 180
  181 TEVDHNVTRH VPRELSERDW SAFIMHFLGL DHIGHKAGPK SRHMMTKQRE MDSIVALIYA 240
  241 AMEEQEHLQS TLFVLCGDHG MNDAGNHGGS SPGEISPALL FISPKFQTKT TPEDSPVEAF 300
  301 SDLQYYRTVE QVDITPTLAG LLGLPIPLNS LGVFIPEFLM MWDNDAHRID ILLRNAKQML 360
  361 SAMKGTFPDL DVEAITPPHG CDKHVLRSAQ DVMSSTASKY NTTRLYLGLF VAALAVLLSF 420
  421 FPAYGLGSKY SYAVTFLMLI IISYGGMMFA SSYVEEEQQF WYWVVTAWTV YLHIKSLRPW 480
  481 HGSKDTRRWN QTGQKFAAEP DIARDFFPRH QNILWALIIL TYFDTCMHLC LNSHSSNIWR 540
  541 SAAILTTIAA FFFKLVFVAS DSPELLYESL LSPIQKSLEE MPLVPPARLS KAVNIPIFLM 600
  601 FRLQAIILDF LKMSAIEVTL TSLLSQNMTF FAFGGSNAIS SVDLSNAYNG IGSYSVVLVG 660
  661 VLTFISNWAG PIWWASAARL LYSNPTFAER YGQRTLLTFH AATSLMSVMA ACTMLRTHLF 720
  721 IWTVFSPKYL YTLAWTILNH MFINLPATAN VSQVLNWQYA FHSVACR