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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|70983546, gi|...
Protein type: Transmembrane
Type Confidence: 0.96
Topology Confidence: 0.68
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGVVDTPGG PLWPGLGFTV AHQKVELEID FATKSLKGKT EITIHPHYKE LRIIRLNFRQ  60
   61 GELKRLNVNG KAPTIKYADP YESLQLYGPH YHQRLSTKID SLLTTTPEPD LLVTIPKSVR 120
  121 IEELDPFSQE AQDQMTLRAS GAGEDTDGPL GSKLAETSLP RFSALTVYIE FTIENIRDGL 180
  181 QFVGVDSGDR RYPHAYTTNS LGYGAASPLF PCVDDPLSRC TWEISVKCPC SLGDVFDRKT 240
  241 RDPSGAHRSK QTPGGSRFIS PDDETLDLSV VCSGDMTDEI VDPRDPSKKT VSFACMSPLS 300
  301 AKQIGFAVGP FEYINLSDFR ESDQDEQLGQ NAIPLHAFCL PGRGDEVRNT CFPMAKAIDF 360
  361 LSLTYGSYPF ASYKICFVDD APENTLPTAC LSICSNHLLF PEDIIDPMYD STRALVHALS 420
  421 CQWIGVNIVP KEPADTWVTV GVAWYITDTF LRKLCGNNEY RFRLKLMSDR VCDLDYERPS 480
  481 IYDMGNILNL DPSEIEFIAL KAPLVLFILD RRLTKASGKA TMSRIISRMF LNARMGDIPN 540
  541 GAITSSQFQK ICERLGHAKL DTFFQQWVYG AGCPRFQATQ RFNKKKLVVE MMIKQVQADQ 600
  601 PSTRDLDKNT FMRDVKEEIR GVYAGNIQPV FSGSMTIRIH EADGTPYEHI VEIKEGVTKF 660
  661 DIPYNTKYKR LKRNKRQKER AAAVSGGDPN AETQEDVLLY CLGDVLQTEE EMQEWRLADW 720
  721 SKEDEDRMGQ ESYEWIRMDA DFEWICKLSL VMPGYMYLSQ LQQDRDVVAQ LESLQYMAAQ 780
  781 REHPLISTIF VRTLMDRRYF YGIREAAARA LVKHAKEETN WLGLFHLERA FQELFCLPGS 840
  841 PMTRSNDFSD RAAYALQLAI PEAISKVRDN DGKTPLRVKR FLYDKLKFND NSNNEYSDHF 900
  901 YVATLMQSLC HAMLGKVESR DVDIDDFDME RMLEIQAEEQ LEKDAIAEFD RYRRMDEWSS 960
  961 SFQNVYSRAA LRCQMQLMRA KILDVDIMQF LPYTRAGTYD LLRADAFECL VELDIFKSPE1020
 1021 LVKWFMFTMS SDSSLWLRRR LHDLFGKALA PVAFGREPEN EPSATADSLI IEQESSTKVR1080
 1081 QADLARKQTV TGAIEALKGE ISGDQNFKEC LWAACNSPGI GILELSVFTD LCKVLYDSVT1140
 1141 SVMVKLKYPR YWQVKHLGKV IPFQSWISNL ILIASGPHAF LTVQPNQDYP RTLKRFLHKW1200
 1201 EAQTRRERDA STWAPYHIQA IEAGFKHPLS KSSSNLATHS EAAHPKPLRF AGTSATEDAG1260
 1261 CSVDAVDTKW WRRRAQTETQ IRAEAEISCL PAMVFYRNFF TSVLFTSHLF ETWRGMVEQA1320
 1321 SRRMAGRPVS NDLYMLTFII FYDGAACSLA LGFIGFFV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle