YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66844530, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	191	0.76
Transmembrane Helix	192	213	0.92
Non-Cytoplasmic	214	226	0.92
Transmembrane Helix	227	247	0.91
Cytoplasmic	248	255	0.80
Transmembrane Helix	256	278	0.91
Non-Cytoplasmic	279	282	0.74
Transmembrane Helix	283	305	0.87
Cytoplasmic	306	316	0.82
Transmembrane Helix	317	338	0.93
Non-Cytoplasmic	339	345	0.86
Transmembrane Helix	346	366	0.93
Cytoplasmic	367	415	0.96
Transmembrane Helix	416	439	0.88
Non-Cytoplasmic	440	456	0.88
Transmembrane Helix	457	478	0.94
Cytoplasmic	479	497	0.89
Transmembrane Helix	498	518	0.93
Non-Cytoplasmic	519	524	0.82
Transmembrane Helix	525	547	0.88
Cytoplasmic	548	556	0.67
Transmembrane Helix	557	579	0.80
Non-Cytoplasmic	580	590	0.77
Transmembrane Helix	591	611	0.91
Cytoplasmic	612	627	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSAWGTGEH LDTSRLARTH SNPPWANQMA GDTRLRGESP TVLGETADTI SSRSGTSNYP  60
   61 KLKSSNFRRI CQRPLLVFLG WLTQISTIIP LRINARARRF DRATTMEEKA SNTDSTAPAH 120
  121 PNSRLPQQSI SSAPVLAQGP KTECTEKGTA TEGSLTDPAC QADDDSEIVK WDGENDPELP 180
  181 LNWPASKKWR NVVMVSALTF VTPFASSMFA PAINQVMVEM GTSNRDIGSF GVSIYLLGYA 240
  241 FGPLVLAPCS ELYGRLIVYH ISAALFILCN VACALSISMP MLIIVRFLTG LVGAAPLTIG 300
  301 PGTVADCFRQ EQRGRAMAIW TMPVLLGPCL GPAIGAYVSR SLGWRWNFWL LIIVSGAVSL 360
  361 FCLVFQRETH APTLLKRKAA RLRKSTGNPN IRHDDRTTIS RSQLITTSIV RPVKMLFLSP 420
  421 VVFGLSLLTA VAYGTLYLFF TTVTDVFASR YGIITNVGLI YLGCGCGQFA GLFILGLVSD 480
  481 AIVRRAARGG EMKPEYRLPP TILGGSMIPI GLLIYGWTAE YRVFWFVPVL GTFLIGFGMI 540
  541 TVFTPVGTYL VDAFPMYAAS ATAANTVFRS VGGAFLPLAG PRMYSSLGQG WGNTLLAGIS 600
  601 LLMMGMIFMS LKYGERLRTH PKYQIKL