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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|70982249, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.43
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNSQRVPDI SRFSQAETTS RLSSTVSTGS TSSDTIRPTR PMANSRRSYG TISSSDLADF  60
   61 DTLPNDGQAD NSSRIPSSQS PSVAALPSDR PRKPSVTRRI SSRRQVPHKG QEFSTDDDVQ 120
  121 EVEEDIAMQQ QGSNPQPSPR LRPLRKQSST LRRRLNARPS PLARADSDND SGEESLLPES 180
  181 CMEAIGTRPP SQQSEASSHH GINHGDGDND ETSDAESFTL KDRQQAINET HPFGIRLWKP 240
  241 ALYKKSRSVE KTAEGDIHSS PGGRVGNILF LANLLWTAFF GWWLALAALF GAIACFIFAY 300
  301 SPSAVEYGKV FWGLSWYLLY PFGSFVRLET DEHYAEEDEG EGRSISEYEQ WQNGDLEHGR 360
  361 LFFGPRSSRS LVGRRRNSID SVSEQDSLLG RTQRISPRES NLHSKRRLFG RGEWTLGRVV 420
  421 FFVFFYFLIG PLMLFVSMVC WLLVFWIPMG RVTLILFDHL RRHPLALSFH SDTSYTRLSP 480
  481 GSPSSILLCT YRAAGLSYWK YTVDGTNIFL INLLGVVLFV IIDYFLLAET LGLHNWMTHP 540
  541 GFVFTLALVS IIPLAYFIGQ AVASISAQSS MGLGAAVNAF FSTVVEVYLY CVALTEGKGQ 600
  601 LVEGSIIGSI FAGILFLPGL SMCFGAIRRK TQRFNVKSAG VTSTMLMFAV IAAFGPTLFY 660
  661 QIYGSHELNC YSCAETTDSG IKDCRRCYFA QVPAVDDNFF RKVVQPYSWF AALFLFLSYI 720
  721 IGLWFTLRTH AALIWATEVE EKKAAVLQQE QSAYEPRHLL SPAGTANATS SNAKGSIRDS 780
  781 QLYKRILGQS LKQVGLSENA NEDASHQPES SSARDKGAMP YIVPPRTEDE DGYSSFKGFR 840
  841 GYTGEENEDL VRQVTEVAAT AAAVAARDVA RTRKPSVQQG TARHSNKITG DLSKSVLEDQ 900
  901 EDVGIEHTHA SGGHDAPNWS KAKSSIILLV ATILYAIIAE ILVNTVDVVL ESVDIDEKFL 960
  961 GITLFALVPN TTEFLNAISF AMNGNIALSM EIGSAYALQV CLLQIPALVL FSALYSRILD1020
 1021 PSDLLTHSFN LIFPQWDMVS VILCVFLLSY VYGEGKSNYF KGSILVLTYL VVVIGFYLAG1080
 1081 YSNVDTMGVD RFDTLALGPI RSENFHTIGQ PTRGMAF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle