YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MCD4_ASPFU
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.75
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.75
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	469	0.99
Transmembrane Helix	470	492	0.84
Cytoplasmic	493	500	0.93
Transmembrane Helix	501	521	0.93
Non-Cytoplasmic	522	527	0.77
Transmembrane Helix	528	544	0.51
Cytoplasmic	545	562	0.46
Transmembrane Helix	563	585	0.89
Non-Cytoplasmic	586	591	0.51
Transmembrane Helix	592	614	0.83
Cytoplasmic	615	621	0.44
Transmembrane Helix	622	643	0.90
Non-Cytoplasmic	644	649	0.45
Transmembrane Helix	650	668	0.96
Cytoplasmic	669	688	0.47
Transmembrane Helix	689	709	0.91
Non-Cytoplasmic	710	723	0.45
Transmembrane Helix	724	747	0.82
Cytoplasmic	748	751	0.48
Transmembrane Helix	752	772	0.71
Non-Cytoplasmic	773	775	0.41
Transmembrane Helix	776	792	0.73
Cytoplasmic	793	841	0.88
Transmembrane Helix	842	863	0.90
Non-Cytoplasmic	864	883	0.80
Transmembrane Helix	884	905	0.88
Cytoplasmic	906	913	0.79
Transmembrane Helix	914	934	0.92
Non-Cytoplasmic	935	945	0.78
Transmembrane Helix	946	967	0.85
Cytoplasmic	968	1032	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARLGRFGFL ALAVVFHLIY AYSIFDIYFV SPIVSGMRSY GVEREPGAKA PASRLVLFVA  60
   61 DGLRADKAFQ PAPDPSPEDG EDAENNDPIY LAPFIRSRVL SHGTFGVSHT RVPTESRPGH 120
  121 VALIAGLYED VSAVTTGWKL NPVNFDSVFN QSRHTWSWGS PDILAMFKEG AVPGRVDADM 180
  181 YGEEIEDFTM DATQLDTWVF NKVKELFASA KSDPELDAKL RQDKVVFFLH LLGLDTTGHG 240
  241 YRPYSREYLH NIKIVDKGVQ EIATLIEEFY GDDRTAFVFT ADHGMSDWGS HGDGHPDNTR 300
  301 TPLVVWGSGV AGPKYTDGKA VTGHEDGFSA DWGLDGIQRH DVAQADVAAL MAYLAGLDFP 360
  361 VNSVGQLPLE YIDASPKEKA LAALANTQEV LEMYRVKEAQ KRAALLRYKP FEPLADHGKN 420
  421 SVEEHIAEIQ VLIANGSYDE PIKRSGALFA TALEGLRYLQ TYDWLFLRTI ITFGYLGWIA 480
  481 YALTTVIDLH VLHRTSDSKR TVGSTIFFTS ILAALFSVLL YQKSSWQYYV YGAFPIFFWE 540
  541 EVFARRKALI AGREILLGHV RSFGGYIASG FQLVAFVAVL EALLMRHQVQ SYFHREIYTV 600
  601 CFVLGSFWPI LYGVDFVRQN TVLSATWAVG CSLMSTFTLL PVIKVENINT ITYGALLMFF 660
  661 TGLFYLLFED TILKHSKSSG HAPGAISSLG SRVIMGMQVG MVLLALIVTR SSVSSLQAKQ 720
  721 GLPFGNQVVG WFVLVASLVL PFFHRLYPNS HYLHRLMVLF LTFSPTFIIL TISYEGLFYF 780
  781 VFCMTLVTWV RLEHAIYVYT ARSSAHYGGN NTVPKKPGLN ATAVIDGQEY RYRRLGLADT 840
  841 RVALFFFFLL QSAFFSTGNI ASVSSFSLES VFRLIPVFSP FSQSALLILK LLIPFAIISA 900
  901 NLGILNRRLE VAPSALFMVV MSISDVMTLN FFYMVRDEGS WLDIGTTISH FLIASFLCTF 960
  961 VAGLEFLSEV FISGVDFGPT TKAIGASITK TVGGTAGSDV VDSQSGPEDA ANSKKAEGLE1020
 1021 GSETIRQNGG SV