YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|218536805, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVKQRIITG VVAAALFIPI VIYGGVPFTV LVYALASIGL YELIRMNKLT LISVPTVLAA  60
   61 LLLWIILIPS SASELFTWIG LGKLEITFVI VLLLLSYTVL SKNTFTFDNA SFLLMATTYV 120
  121 AMGFLYLNET RILGIKYVFC ALFVIWATDS GAYFVGKALG KRKLWPEISP NKTIEGSLGG 180
  181 IVCGIIVALV YNMFFPVESN VLILIALTII ISIFGQIGDL VQSAFKRHYG VKDSGTILPG 240
  241 HGGILDRTDS WLFVLPILYF LLQYN

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.74
Transmembrane Helix	12	37	0.83
Cytoplasmic	38	48	0.67
Transmembrane Helix	49	68	0.95
Non-Cytoplasmic	69	75	0.68
Transmembrane Helix	76	100	0.84
Cytoplasmic	101	106	0.70
Transmembrane Helix	107	127	0.86
Non-Cytoplasmic	128	132	0.82
Transmembrane Helix	133	156	0.88
Cytoplasmic	157	173	0.86
Transmembrane Helix	174	195	0.90
Non-Cytoplasmic	196	200	0.83
Transmembrane Helix	201	221	0.92
Cytoplasmic	222	265	0.76