YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|229123203, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFMKGYFITM KNGGTNMLKK FFAMSTTVVL AAGLLSGCGT KESSANKNAD TKKGYVPKTL  60
   61 NVQFVPSQNA DTLEAKAKPL EKLLSDKLNI PVKVSISTNY NTIVEAMASK QVDVGFLPPT 120
  121 AYVLAHEKKA ANVILQAQRF GVDDETGAPK KDLVDFYKSE FVVKKDSNIN SVKDLKGKKI 180
  181 GYQDVTSSAG YVWPAAVLLK EGVDPLKDVK PVTLKGHDQS LIALLNGDVD AAVVFQDARN 240
  241 IVKKDYPNIF DQTKIVKFTE KIPNDTISVR SDLDEEWSKK LQDAFIEIGK NEEGHKIIKE 300
  301 VYSHEGYVKS DDSKFDIVRE YGKKVKTQ

Type	Start	End	Confidence
Signal Peptide	1	39	0.66
N-region	1	30
H-region	31	36
C-region	37	39
Cleavage Site	39	40
Non-Cytoplasmic	40	328	0.98