YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|228916197, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEELVMSFHK PEQIAELVIE AGVQKVSQTL PAMLILGFLG GAFISLGFLL NIRVLGNLPE  60
   61 RWGSLVNVLG GAVFPVGLML VVLAGGELIT GNMMSMSMAL YAKKITFVSV LNNWIWITFM 120
  121 NFVGAIFVAY CFGHLGGLTE GDYLNKTVAI AEGKLHESFG RTLILAIGCN WLVCLALWLA 180
  181 YGTSDFVGKI IGIWIPIMAF VVIGFQQVVA NMFVISAVIF AGHLTWMDLA RNFVPVFIGN 240
  241 VIGGAGFVGF AYYACYQKQH SNMK

Type	Start	End	Confidence
Cytoplasmic	1	31	0.68
Transmembrane Helix	32	52	0.92
Non-Cytoplasmic	53	67	0.60
Transmembrane Helix	68	91	0.85
Cytoplasmic	92	111	0.59
Transmembrane Helix	112	134	0.87
Non-Cytoplasmic	135	158	0.69
Transmembrane Helix	159	182	0.87
Cytoplasmic	183	189	0.64
Transmembrane Helix	190	221	0.77
Non-Cytoplasmic	222	232	0.64
Transmembrane Helix	233	256	0.90
Cytoplasmic	257	264	0.80