YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|65318667
Protein type:	Transmembrane
Type Confidence:	0.66
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQKLWLTVV CAVFVTVSFL YFVSLYSYEK LYVDNLKDSL VMEGKRLAAQ YDKSEGISTF  60
   61 EEKVRAFDQI SSSDVLFVSN PRDLSACLPF DVHHHSLISE GDRQALLDGK TVTKIGYEEH 120
  121 FERNIMGVVI PVLENKKLVG IVYSYIPLKS IKDLIYDMGL ILAPLALAIT LLTIWIGRKI 180
  181 IIAITRPLSQ MERVANHLAT GDFSERITIS SEDEIGRLGK AFNKMANSLE TEDVKRKEFL 240
  241 ANVSHELRTP LSYIKGYSEA ILDGVAKGPQ QEKVTQLIHK EADRMQRLVH DLLDLAQLEG 300
  301 EHFPLQKQPI VFSQLIEDVL DTYEIKFIEK KIRISTNLNP EIIVMIDEDR MQQVLHNVLD 360
  361 NAIRYTNQNG DIMITLRQID DYCELSIKDT GIGIDTEHLE NLGERFYRVD KARSRQHGGT 420
  421 GLGLAIVRQI VHIHDGQWQI ESEKGNGTTV SIKLKVQNEE SMF

Type	Start	End	Confidence
Cytoplasmic	1	4	0.35
Transmembrane Helix	5	26	0.56
Non-Cytoplasmic	27	153	0.67
Transmembrane Helix	154	177	0.71
Cytoplasmic	178	463	0.49