YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|229120800, gi...
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGILGIGRYV PEKVVTNHDL EKIMDTSDEW IRTRTGIAER RIADDTIDTS YMAVEASKKA  60
   61 LEDAGISGED IDLILVATVT PDRAFPAVAC VIQEAIGAKH AAAMDLSAAC AGFMYGMITA 120
  121 QQFIQTGTYK NVLVVGSDKL SKIVDWNDRN TAVLFGDGAG AIVMGAVSEG KGVLSFELGA 180
  181 DGSGGKHLYQ DEYVMMNGRE VFKFAVRQLG DSCLRVLDKA GLTKEDVDFL VPHQANIRIM 240
  241 ESARERLNLP QEKMSMTIEK FGNTSASSIP IAMVEELQNG RIQDGDLIIL VGFGGGLTWG 300
  301 AVALRWGK

Type	Start	End	Confidence
Non-Cytoplasmic	1	286	0.79
Transmembrane Helix	287	307	0.77
Cytoplasmic	308	308	0.70