YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|65318367
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKNLDEVMS KKEGKHVMSY IPNMITIANF VCGLLAIHAV FVHDMYGAVM FIITGMVFDL  60
   61 FDGMVARKLD SVSEIGGELD SFADLVTFGV APSILAYSVA LKDLQSIGML CALAYSVCGM 120
  121 LRLARFNTQQ SKLPTFIGMP IPFAAICLLI LCLLNNPVSV AFGTCILAYL MVSKIKFPHF 180
  181 KKDISESLKS ERWD

Type	Start	End	Confidence
Cytoplasmic	1	19	0.94
Transmembrane Helix	20	40	0.95
Non-Cytoplasmic	41	45	0.78
Transmembrane Helix	46	66	0.84
Cytoplasmic	67	80	0.80
Transmembrane Helix	81	100	0.83
Non-Cytoplasmic	101	105	0.73
Transmembrane Helix	106	124	0.92
Cytoplasmic	125	132	0.80
Transmembrane Helix	133	154	0.86
Non-Cytoplasmic	155	158	0.71
Transmembrane Helix	159	177	0.80
Cytoplasmic	178	194	0.78