YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|170670293, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVERMKRKM VGKWFSFLSA LIILLGIAMP QVKAEVMNRE TYKMDWSYSN SKQREIKTEI  60
   61 IKTASGSIAY CLTPDLRSPN GEDLPEMGKT SDAVYRVLLN GYPQKGPSEL GVATTEEAHY 120
  121 ATQLAVWIAA NELTEEDLVA KNERVHNLMK RLVEASKKET GSQDVFFKVN PVDSQTATQN 180
  181 GDYLETGFYA VQTNAVSGSY TILPENAPKG LRIVNENGEE KSTLSINEKF KILLPKDTSS 240
  241 GNFKMKVKST LTNLQAIAFK GSEKVQNTTV LLQRNSEKIS TDLVVNWESV GSLKIMKLGE 300
  301 KKEVLKGAVF EVSNENFKQN VTTSDKGIAE LGNLPIGIYS VKEIQAPAGY VLDRSVKKIE 360
  361 VKTGETAVLE LKNENVKGEL EITKVDVADG NTKLPNAEFT IYNEQGKEVV KGKTDEKGVA 420
  421 KFKLPYGKYT YKETIAPNGY VINEETFAFE IKENGEIIKH IVQDKKVEGE LEITKVDVAD 480
  481 GNTKLPNAEF TIYNEQGKEV VKGKTNEQGI AKFKLPYGKY TYKETIAPNG YVINEEKFGF 540
  541 EIKENGEIIK HIVKNKKEEK ASFPSKPNKP TPNGEVKPSA DVKPMQQPST HNEVRLPATG 600
  601 GVSNQFTSLF VLGISFIIAG AYVLRMKNRK EM

Type	Start	End	Confidence
Signal Peptide	1	34	0.91
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	605	0.99
Transmembrane Helix	606	624	0.95
Cytoplasmic	625	632	0.86