YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70952789
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKQALKRRN KLLKKNKERM DILMGISKGK DAEKKEDNEQ KIDNSDKKQE DEKLKTSNLD  60
   61 TINEINASSA KVSNSDTTND IDLKEDQTKD NDNKEKKKST EKNDDKISEK NGDKASENKS 120
  121 DLSENKNASQ NSDTLKDKKS NPSNSEKDNL KKDETNLSQG NDKKEKSNLK ERHTKEKKHK 180
  181 DIDKTNDNAN KLNDKDSNET KASENTMPIK IDGKKQIQFI ILIICSVLIS LLKRKFYDNK 240
  241 KIVYIDKSFI NKKMIFRFLN SRFFLIFFSF LYNLLFSLVD IRSYLKKENM TIYEIVENIK 300
  301 NIKKKFKNES EALLFLLNNG STFSIFFVGI IKSYILFMFL THLFDDIFHS YSVFTYTPIF 360
  361 QEENII

Type	Start	End	Confidence
Non-Cytoplasmic	1	216	0.70
Transmembrane Helix	217	237	0.61
Cytoplasmic	238	257	0.64
Transmembrane Helix	258	279	0.84
Non-Cytoplasmic	280	321	0.63
Transmembrane Helix	322	344	0.79
Cytoplasmic	345	366	0.64