YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67986340, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTTSTGSR GGTGSKRGKG GSRNRTVTSS GVPVVQRRNV RAAVLTYTGV VLICLWGLLP  60
   61 FYWMIVTSFR EVGYTFDTTP WPTHTTLENY ATAFSTARGN HFGRALLNSL VIGAATTVVG 120
  121 LVVGVFTAYA LARLEFRGKF YVLGLILGAS MFPGVALVTP LFQLFTDLGW LNTYQALIIP 180
  181 NISFVLPLTV YTLTAFFTEM PWELEESARM DGCTPGQAFV KVILPLAAPG IFTTAILAFT 240
  241 AAWNEFLLAS QLGGDRVQPV TVAIASFAGA QPHQEPYTAV MAAGTIVTVP LIIMVLVFQR 300
  301 RIVSGLTAGG VKS

Type	Start	End	Confidence
Cytoplasmic	1	43	0.98
Transmembrane Helix	44	66	0.91
Non-Cytoplasmic	67	109	0.96
Transmembrane Helix	110	131	0.94
Cytoplasmic	132	139	0.89
Transmembrane Helix	140	162	0.92
Non-Cytoplasmic	163	175	0.87
Transmembrane Helix	176	198	0.91
Cytoplasmic	199	217	0.95
Transmembrane Helix	218	242	0.90
Non-Cytoplasmic	243	276	0.97
Transmembrane Helix	277	298	0.93
Cytoplasmic	299	313	0.94