YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56522211
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDIYIVLRW LCKAIVSSLF GDVNIINPEN VPLYGSVIFV GNHNNQFIDA CVLVASIPRQ  60
   61 IKFIVAEKSM KRPVIGELAR LAGCISVKRP EDLKFKGIGR IYWNTGDTKI KGINTRFKLD 120
  121 VQIGDKLMTQ NKMFTVTKIE SEIELILQNP ININCEDKVN GVPFKIVPKI NQTEVYNLVT 180
  181 HSLKNGDPIG IFPEGGSHDR TNLLPLKPGV AIMTLCALAD GIEDVSIIPV GLSYSKLYQL 240
  241 QGCVTIFVGN AIIASQDLCN DYNNNNRETI SKLLAKIEEG MRSCMLTSKN HETSRCIELC 300
  301 VSLYTPERMT ISKNKIYNIL QLFSEMFWKF GNSKEIENLC YELQCYEKLL QANKIKDDEV 360
  361 WMLKQSTSAA TLKFIEHICS LIFCIIFGMT FSLLWLPLVA ISVYLAENHR KMSLKNSLVK 420
  421 IQGGDVVASY KVLVLLVLLP TFNIIYGLLF SLYFYKSWLQ RIAFTICSIC ILPICYYINI 480
  481 NYSVQIPTLL RQMKILLKVI CGIINVWRDN ERELISTRHE LQLKVRNTVS KLGHKVSDNF 540
  541 LEQLHRNIPK FVINADTKRL IRGKDEWVPI LKRSQLEYRE EIL

Type	Start	End	Confidence
Non-Cytoplasmic	1	377	0.57
Transmembrane Helix	378	406	0.79
Cytoplasmic	407	426	0.54
Transmembrane Helix	427	450	0.85
Non-Cytoplasmic	451	461	0.41
Transmembrane Helix	462	481	0.92
Cytoplasmic	482	583	0.58