YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PHG1B_DICDI
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.92
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	221	0.99
Transmembrane Helix	222	243	0.92
Cytoplasmic	244	289	0.95
Transmembrane Helix	290	314	0.87
Non-Cytoplasmic	315	321	0.82
Transmembrane Helix	322	342	0.91
Cytoplasmic	343	352	0.94
Transmembrane Helix	353	375	0.88
Non-Cytoplasmic	376	389	0.69
Transmembrane Helix	390	414	0.81
Cytoplasmic	415	445	0.91
Transmembrane Helix	446	466	0.89
Non-Cytoplasmic	467	477	0.82
Transmembrane Helix	478	503	0.89
Cytoplasmic	504	511	0.93
Transmembrane Helix	512	534	0.90
Non-Cytoplasmic	535	550	0.87
Transmembrane Helix	551	575	0.90
Cytoplasmic	576	587	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLQILLIYL ICIIVSSIVL VESSNKHHFK ENDEVPFYVN NVGPYSNPTE TYEFYTLPFC  60
   61 KPSSISYKKT KLGEILQGDS AVLSDYQFPF KSSFENKQLC EYTLKKEDIE KFKKAIGEYY 120
  121 YAEMIYDDLP IFSFVGTVDD SDLTNIRYYL YNHIPFEFDY NGDQVIRVNI DTEHIKVIEL 180
  181 SDQDEITLKL TYSAKWQPTE HEFSKRMDLY EEFFTKELEI HWLSVMNSFF LVVLLTAFLA 240
  241 IMIMKILKND YSRYSKTDEE EDSDYQEDYG WKLVHGDVFR FPPYKNVFSA FYGIGWQFIS 300
  301 IVCGILALSL FGMFYPNNGG NMYTAGIVLY ALTSGISGYQ SAKMYKNMGG NKWAWNIVLT 360
  361 ATLFVAPLFI VVILSNTVAI TWHSTVALPI LTMIEVITIW LFVGFPLTVV GGIAGRRLSE 420
  421 NFEAPCRTKN FPREVPPIQW YRRLPCQILI AGFLPFSAIY IELFYIFNSV WGHSTYTLYG 480
  481 ILCLVFLILI NVTVCITVAL TYFQLSMEDH KWWWNSFING GSTVVFIYMY SIYYYYYISH 540
  541 MYGLLQATFY FTYMLIVCFF FFILLGTVGF YSSLIFVKRI YRNLKSD