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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ECMA_DICDI
Protein type: Globular with Signal Peptide
Type Confidence: 0.96
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKISIFILLL FISSMVIISV NAETETIQTN TACDCDDDCD DGNRWSTDMC SAGLLFGKYC  60
   61 THTQICCDDE NACTIDSCSK TSGCVHTPIN VDDKNPCTID SCIKGFISHT QISCDDKNAC 120
  121 TIDSCDCSSG CQNKPMSCDD NNPCTVDSCN NSTGCRNTPI SVDDNNPCTI DSCSKSTGVV 180
  181 HIPINVDDLN PCTIDACTKE GGVTHTPVNV DDNNKCTTDS CSLFTGITHT EICCDDNNAC 240
  241 TDDSCSPSTG CVNTPISCDD KNPCTVDSCN NSTGCCYTPI NVDDNNPCTI DACTKSTGVT 300
  301 HTPINVDDNN QCTTDSCTKE GGVTHTPVNT DDNNPCTVDS CSPFTGVSHT PINVDDNNKC 360
  361 TIDACTKEGG VTHTPVNTDD NNACTLDSCS PLTGVTHTPI NCDDKKACTV DSCSNSTGCV 420
  421 NTPISCDDNN PCTVDTCDDS TGCCNTPINV DDNNPCTVDA CTKSTGVTHT PVNVDDNNKC 480
  481 TIDACTKEGG VTHTPVNTDD NNACTLDNCS PLTGVTHTPI NCDDKKACTV DSCSNSTGCV 540
  541 NTPISCDDNN PCTVDSCDDI TGCCNTPINV DDNNPCTVDA CTKSTGVTHT PVNVDDNNKC 600
  601 TIDACTKEGG VTHTPVNTDD NNACTLDSCS PSTGVSHTPI NCDDSNPCTV DSCSNSTGCV 660
  661 NTPVNVDDNN PCTVDACTKS TGVTHTPVNV DDNNKCTIDA CTKEGGVTHT PVNTDDNNAC 720
  721 TIDSCSPSTG ISHTPINCDD KKACTVDSCS NSTGCVNTPI SCDDNNPCTV DSCDDLTGCC 780
  781 NTPINVDDNN PCTIDACTKS TGVTHTPVNV DDNNKCTIDT CTKEGGVTHT PVNTDDNNAC 840
  841 TLDSCSPSTG VSHTPINCDD NNKCTVDSCS NSTGCVNTPI NCDDSNPCTV DSCNNSTGCV 900
  901 NTPVNVDDNN PCTVDACTKS TGVTHTPVNV DDNNKCTIDA CTKEGGVTHT PVNTDDNNAC 960
  961 TIDACTKEGG VTHTPVNTDD NNACTLDSCS PSTGVSHTPI NCDDSNPCTV DSCSNSTGCC1020
 1021 NTPINVDDNN PCTVDSCTKP TGVTHTPVNV DDNNKCTIDA CTKEGGVTHT PVNTDDNNAC1080
 1081 TLDSCSPSTG ISHAPINCDD SNPCTIDSCN NSTGCCNTPI NVDDNNPCTV DSCTKSGGVT1140
 1141 HTPVNVDDNN KCTTDACTKE GGVTHTPISC DDNNACTIDS CSNSTGCVNT PISCDDRNPC1200
 1201 TVDTCTKEKG CQHSPIDTDD SNKCTIDACS STTGVTHTSI NCDDNNACTF DSCSNSTGCV1260
 1261 STPISCDDKN PCTLDSCDKK TGCCNTPINV DDNDKCTTDS CTKEGGVTHT PISCDDNNAC1320
 1321 TTDSCSKSTG CVNKPISCDD SNPCTVDSCS NSTGCCNTPI NVDDNNPCTT DSCTKSGGVT1380
 1381 HTPVNVDDNN KCTTDSCTKE GGITHTPISC DDNNPCTLDS CSPTTGCVNK PMNVDDNDAC1440
 1441 TTDTCNKDGT ITHTPINTDD NNKCTLDACS PKTGVTHTPI NCDDGNKCTI NSCSPSVGCI1500
 1501 STPVSCPKPK DKCSISQCDS AKGCIEVPMN CTSDKCNEAS CCDGVCTSKP ISCPKPKNKC1560
 1561 QVAKCDLIKG CTVSNVVCDD GNACTEDSCC SDTGKCQFEP IKLPKNKNKC IISKCDPIKG1620
 1621 TITNSTVNCE CDDLCNIGEC CEDTGKCNYR QKDCDDNNPK TADSCDSKTG KCINKPYNVI1680
 1681 TSGSNLISGL IGGLIGGGTG GKGDCKTCKN 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle