YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56513724
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SIKHMHLMKR KKGFIGKDPY CSTHLILGSG RSNKKLKKKF LWNRGIDQNT NVSELSYIRD  60
   61 LDNSSFMQDN SQHLVLYDNN RYMDYPRNRK ESRSEKMRYF FVYSPDIIQR WLRVIFNIII 120
  121 TSLIVTLIYF IFVSVREDIN KKVAIQVQNV KEESNTCKKQ YYAHKCGTVS LPLLNEKCEE 180
  181 WLKCMNTDHK LYQDISFLSA QMLGQIMNAF IVQFEWKSIC VIAFIFLLIF IGSNYALSIG 240
  241 GGNKSNNNDY SLYNPLMNSP HGIPPYPPYF NFYPYMPSPM NYNNPYGPEF ALMNHSFLHN 300
  301 KYFPDNNYSR NSYSYSNPYQ HTNGHND

Type	Start	End	Confidence
Cytoplasmic	1	110	0.66
Transmembrane Helix	111	133	0.88
Non-Cytoplasmic	134	215	0.61
Transmembrane Helix	216	237	0.82
Cytoplasmic	238	327	0.58