YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60467124
Protein type:	Globular with Signal Peptide
Type Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTEKNPLKL TTNKVKLFIL ILLVFSFYLL VVNVFGDFSF EIKNSYADNY FNEKEVNESF  60
   61 SKCSKFKCKI EIHSEFSNEK AESAQAIIYF FSQYQESSNK IYNNTLKRYN PRQITIGWTM 120
  121 ESGGLYRFEG DSNFIISNFN ITVGYPRVND FNKQTHIYVP YGPVEYSGSD SYAHSAKFDR 180
  181 IKEIPSKRNN SIVWISSNCW HEDYKRVYLM RSIMNITKVD SYGSCLNNID FTDQDKLINS 240
  241 KHDQKMDVLK RYNFAIAFEN SLCKDYITEK LWESLSVGTI PIYLGAPNIM EFLPDPDSII 300
  301 NVRDFKSVND LVDYIKKVEN DQNLRLKHLK WIKIKKWSKE FQNIYDESVN NLDPLCSICS 360
  361 KIASKKILIP KQSPFLAGNE SNFTLPLLK

Type	Start	End	Confidence
Signal Peptide	1	36	0.71
N-region	1	27
H-region	28	33
C-region	34	36
Cleavage Site	36	37
Non-Cytoplasmic	37	389	0.99