YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CRLA_DICDI
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.44
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	19	0.44
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	72	0.95
Transmembrane Helix	73	95	0.92
Cytoplasmic	96	104	0.77
Transmembrane Helix	105	124	0.92
Non-Cytoplasmic	125	143	0.87
Transmembrane Helix	144	165	0.91
Cytoplasmic	166	172	0.89
Transmembrane Helix	173	195	0.92
Non-Cytoplasmic	196	212	0.93
Transmembrane Helix	213	233	0.94
Cytoplasmic	234	244	0.81
Transmembrane Helix	245	267	0.83
Non-Cytoplasmic	268	369	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQILLSTFI SFIIIIVSSN DIRSGENDNF NNNKMINNFL TTITTNDTII IKETESPNDY  60
   61 DFSKEQIESL DKIVYFSSTM GIVGALFIIV SFFLFKAART FATKMIFFLS LSDLFAAIFY 120
  121 LPYYRDSDIM CNLQGMGLVF FLSSSYLWTM CISISLFMVF FTTIFELNHW FKYFHFICWG 180
  181 IPLFTAIISL IFHAYGKTGS WCFISDPTSI FRLLYYLPLI VVFFINLVVF IAIRWKISQH 240
  241 SNSLVSRVNI IVSFYLIAFS LSQLPTIINS IQNFSDPDNP QFSLFAFQLL LQPLQGFLNC 300
  301 VVYGINEGFI NHYVEFFEKY IFRCRCRKSR ELKEIESDKT SLLVDYENSD DEEGFDGMDK 360
  361 LIIDDYNRV